Keywords: animal behavior, dairy cattle, digital dermatitis, sensor data, machine learning Abstract The aim of this study was to employ machine learning algorithms based on sensor behavior data for (1) early-onset detection of digital dermatitis (DD); and (2) DD prediction in dairy cows. With the ultimate goal to set-up early warning tools for DD prediction, which would than allow a better monitoring and management of DD under commercial settings, resulting in a decrease of DD prevalence and severity, while improving animal welfare. A machine learning model that is capable of predicting and detecting digital dermatitis in cows housed under free-stall conditions based on behavior sensor data has been purposed and tested in this exploratory study. The model for DD detection on day 0 of the appearance of the clinical signs has reached an accuracy of 79%, while the model for prediction of DD 2 days prior to the appearance of the first clinical signs has reached an accuracy of 64%. The proposed machine learning models could help to develop a real-time automated tool for monitoring and diagnostic of DD in lactating dairy cows, based on behavior sensor data under conventional dairy environments. Results showed that alterations in behavioral patterns at individual levels can be used as inputs in an early warning system for herd management in order to detect variances in health of individual cows.

Effective conservation actions require effective population monitoring. However, accurately counting animals in the wild to inform conservation decision-making is difficult. Monitoring populations through image sampling has made data collection cheaper, wide-reaching and less intrusive but created a need to process and analyse this data efficiently. Counting animals from such data is challenging, particularly when densely packed in noisy images. Attempting this manually is slow and expensive, while traditional computer vision methods are limited in their generalisability. Deep learning is the state-of-the-art method for many computer vision tasks, but it has yet to be properly explored to count animals. To this end, we employ deep learning, with a density-based regression approach, to count fish in low-resolution sonar images. We introduce a large dataset of sonar videos, deployed to record wild mullet schools (Mugil liza), with a subset of 500 labelled images. We utilise abundant unlabelled data in a self-supervised task to improve the supervised counting task. For the first time in this context, by introducing uncertainty quantification, we improve model training and provide an accompanying measure of prediction uncertainty for more informed biological decision-making. Finally, we demonstrate the generalisability of our proposed counting framework through testing it on a recent benchmark dataset of high-resolution annotated underwater images from varying habitats (DeepFish). From experiments on both contrasting datasets, we demonstrate our network outperforms the few other deep learning models implemented for solving this task. By providing an open-source framework along with training data, our study puts forth an efficient deep learning template for crowd counting aquatic animals thereby contributing effective methods to assess natural populations from the ever-increasing visual data.